Learn about KBase at PAG 32, January 10-15, 2025

Workshops and Presentations

KBase for Plant Science

Our KBase for Plant Science session at PAG runs from 10:30 – 12:40 on Friday Jan 10 in Palm Room 3-4.

Please sign in to let us know how to contact you for follow up: https://forms.gle/zaSgYbo2iugnNADNA.

This presentation will cover three parts:

1. Intro to KBase and RNA-seq Analysis (Zach Crockett)
   • Intro to KBase Slides
   • Demo Narrative
     • Based on Published Case Study: A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum.
2. Using Multiplex Network-Based Workflows to Analyze Gene Sets of Interest (Mallory Morgan)
   • Slides: Multiplex Network Approaches
3. Genome-Wide Association Studies in KBase for the Discovery of Genomic Variants Modulating Ionomic Composition in Poplar (Raphael Ployet)
   • Presentation Slides
   • Populus_ionomics_GWAS Narrative

Data Management in KBase, the DOE Systems Biology Knowledgebase

https://plan.core-apps.com/pag32/abstract/dbb93a7a-1ab8-46b6-b1a1-a2d367e405cc

Saturday, Jan 11 5:20 PM

Pacific H-I (2nd Floor)

BER Plant Genomic Science workshop (with the Joint Genome Institute, JGI)

https://plan.core-apps.com/pag32/event/ccb7e3a674d26e5273e1670285c10d44

Monday, Jan 13 6:20 PM

Palm 3-4

Posters:

P786 Data Management in KBase, the DOE Systems Biology Knowledgebase

https://plan.core-apps.com/pag32/abstract/d7bfc3864221ff346602355c42af091d

Monday, Jan 13 10:00 AM – 11:30 AM

Exhibit Hall – Lower-Level Poster Area

P787 DOE Systems Biology Knowledgebase (KBase) Overview

https://plan.core-apps.com/pag32/abstract/d7bfc3864221ff346602355c42afc4b6

Monday, Jan 13  3:00 PM – 4:30 PM

Exhibit Hall – Lower-Level Poster Area

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