EMSLSS21Banner

Welcome!

The 2021 Multi-Omics Modeling of Biochemical Pathways course was a virtual course hosted by the Environmental Molecular Sciences Laboratory (EMSL) and Pacific Northwest National Laboratory (PNNL), featuring experts from EMSL, PNNL, Agile BioFoundry, and KBase.

Materials from this course cover visualization tools, analysis, and modeling of multi-omics data for understanding biochemical pathways. The curriculum includes lectures around topics of experimental design, transcriptome and proteome data, metabolomics and lipidomics data, metabolic modeling, and fluxomics.

The curriculum for modeling is accessible to the community as part of the EMSL 2021 Summer School – Multi-omics Modeling of Biochemical Pathways Organization in KBase. Create a KBase account and request to join the KBase Org to get started today!

Course Elements

Course Elements

1. BioDesign

Summary – Corydon Ireland

Presenters:

Kristin E. Burnum-Johnson, Scott Baker, Lee Ann McCue & Nathalie Munoz, EMSL

Jon Magnuson & Lisa Bramer, PNNL

Day 1 on EMSL LEARN
2. Proteomics

Summary – Corydon Ireland

Presenters:

Kristin E. Burnum Johnson & Aivett Bilbao, EMSL

Yuqian Gao, PNNL

Day 2 on EMSL LEARN
3. Metabolomics

Summary – Corydon Ireland

Presenters:

Nathalie Munoz, Robert Young, & William Kew, EMSL

Young-Mo Kim, PNNL

Day 3 on EMSL LEARN
4. Proteomics & Metabolomics Data Analysis, Intergration, and Visualization

Summary – Corydon Ireland

Presenters:

Kelly Stratton, David Degnan, Lisa Bramer, & Rachel Richardson, PNNL

Day 4 on EMSL LEARN
5. Metabolic Modeling

Summary – Corydon Ireland

Presenters:

Jeremy Zucker, PNNL

Janaka Edirisinghe & Chris Henry, KBase and Argonne National Laboratory

Narratives

available at EMSL 2021 Summer School – Multi-omics Modeling of Biochemical Pathways Organization

Day 5 on EMSL LEARN

Sponsors

 
EMSL, the Environmental Molecular Sciences Laboratory
 PNNL, Pacific Northwest National Laboratory
US Department of Energy | Office of Science DOE, US Department of Energy
Network maintenance Jun 24-27

Update noon CDT: the data center maintenance is complete, and we believe all systems are back to normal.  Please contact us if you have problems.

Our data center will be performing network maintenance Friday, June 24, to Monday, June 27, 2022.  All KBase services, including narrative.kbase.us, appdev.kbase.us, and all compute jobs will be unavailable during this time.  We will begin shutting down services at approximately 2pm CDT (12pm PDT) on June 24.  We hope to be able to restore service on the morning of June 27.

www.kbase.us and status.kbase.us will not be affected by this work.  We will update status.kbase.us as much as possible during the maintenance.

System maintenance May 25

We will be performing system maintenance on Wednesday, May 25, from 2-4pm PDT (4-6pm CDT).  narrative.kbase.us, compute jobs, and appdev.kbase.us may be unavailable or unstable for parts of this time.

We do not anticipate any interruption to www.kbase.us.