Jan 29, 2026

JGI-KBase Data Transfer Service Launched

New service enables transfer of JGI data to KBase

The teams at the DOE Joint Genome Institute (JGI) and the DOE Systems Biology Knowledgebase (KBase) are proud to announce the launch of the first version of a new data transfer service (DTS) between their platforms. The initial version of DTS enables users to push data from their IMG Genome Cart into their KBase Staging Area. 

Users can search and find genomes of interest to move to KBase using the normal IMG/MER interface. After selecting the genomes to push, add them to your cart. With the genomes selected, go to the “Upload & Export & Save” tab, provide a name and description for the transfer job, then click “Push to KBase” to begin the transfer. File transfers are available for .fna (FASTA sequence only) and .fna + .gff  (sequence and annotation).

Currently, the JGI-KBase DTS only supports isolate genomes sequenced by JGI. However, MAGs and other data types will be integrated soon. We encourage JGI and KBase users to try out the DTS and report any issues by creating a ticket on the KBase Help Board.

Ben Allen
Ben Allen

Ben Allen coordinates outreach and user development activities to build the KBase user community while engaging in scientific collaborations to advance the use of the platform. His background in biochemistry and science education helps him develop protocols and training materials that provide depth while being accessible to a wide audience. Research interests include systems biology, microbial ecology, bioremediation studies, and biology education.

Elisha Wood-Charlson
Elisha Wood-Charlson | Engagement Lead
Lawrence Berkeley National Laboratory

Elisha M Wood-Charlson is KBase’s User Engagement Lead. She has a PhD and 10+ years of experience as a microbial ecologist focused on host-microbe-virus interactions in the marine environment. Since leaving the research bench, she has moved into the realm of scientific community engagement, with the goal of making microbiome data science more efficient through effective collaboration, building trust in online communities, and developing shared ownership throughout the scientific process.

Zach Crockett
Zach Crockett

Zach Crockett is a member of the outreach, communications, and user development team. His background is in biochemistry and cellular biology. He has professional experience in medical lab science testing information management systems, creating training plans, improving processes, and developing standard operating procedures.