JGI-KBase Data Transfer Service Launched
New service enables transfer of JGI data to KBase
The teams at the DOE Joint Genome Institute (JGI) and the DOE Systems Biology Knowledgebase (KBase) are proud to announce the launch of the first version of a new data transfer service (DTS) between their platforms. The initial version of DTS enables users to push data from their IMG Genome Cart into their KBase Staging Area.
Users can search and find genomes of interest to move to KBase using the normal IMG/MER interface. After selecting the genomes to push, add them to your cart. With the genomes selected, go to the “Upload & Export & Save” tab, provide a name and description for the transfer job, then click “Push to KBase” to begin the transfer. File transfers are available for .fna (FASTA sequence only) and .fna + .gff (sequence and annotation).
Currently, the JGI-KBase DTS only supports isolate genomes sequenced by JGI. However, MAGs and other data types will be integrated soon. We encourage JGI and KBase users to try out the DTS and report any issues by creating a ticket on the KBase Help Board.