ENIGMA SFA

Ecosystems and Networks Integrated with Genes and Molecular Assemblies

Improving metagenomics workflows in KBase

 

 

 

The Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA) Science Focus Area (SFA), driven by Dr. Paul D. Adams at Lawrence Berkeley National Laboratory (LBNL), aims to advance knowledge of microbial biology and better understand effects of the microbial community on the organisms and abiotic factors around them across multiple scales. ENIGMA studies everything from single molecules to ecosystems at large to unlock how they are interconnected.

Collaborative Development Projects

Starting Fall 2021 – Long read assembly of microbial isolates and metagenomes

Reference-based metagenome workflow

Functionality and Tools:

Additional Information

Meet the Members

SFA Principal Investigator: Paul D. Adams1,2
SFA Technical Co-Manager: Adam P. Arkin1,2,3
SFA Contact: Astrid Terry1
KBase Contact: Dylan Chivian1,3
Lead Developers: John-Marc Chandonia1,3, Alexey Kazakov1, Lauren Lui1, Torben Neilson1, Anni Zhang4
Project Team: Eric J. Alm4
Affiliations: 1Lawrence Berkeley National Laboratory, 2University of California at Berkeley, 3KBase, 4Massachussetts Institute of Technology

Resources