Persistence Control SFA

Understanding the genetic determinants of environmental persistence, from microbe to community to ecosystem.

The Persistence Control of Engineered Functions in Complex Soil Microbiomes Science Focus Area (SFA), led by Dr. Robert Egbert at Pacific Northwest National Laboratory (PNNL), explores the potential to specify and control environmental niche for synthetic microbiomes deployed in rhizospheres to ensure safe deployment of productive and resilient bioenergy crops. Preventing the complementation of niche restrictions in synthetic communities (SynComs) requires a fundamental understanding of the connection between genotype and phenotype (function) in an organism, within communities, and in the context of the environment.

Collaborative Development Object

Starting Fall 2021 – Improved protein annotation using machine learning, multi-omics data integration, and structural prediction

Additional Information

Meet the Members

SFA Manager: Brian Thrall1
SFA Principal Investigators: Robert Egbert1
KBase Contacts: Chris Henry2,3, Janaka Edirisinghe2,3
Lead Developers: William Nelson1
Project Team:
Adam Deutschbauer4, Neeraj Kumar1, Jason McDermott1

Affiliations: 1Pacific Northwest National Laboratory, 2Argonne National Laboratory, 3KBase, 4Lawrence Berkeley National Laboratory


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System maintenance May 25

We will be performing system maintenance on Wednesday, May 25, from 2-4pm PDT (4-6pm CDT)., compute jobs, and may be unavailable or unstable for parts of this time.

We do not anticipate any interruption to